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Research

Scientific computing and academic tools.

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lab-tools
529

dependency-analysis

์ฝ”๋“œ๋ฒ ์ด์Šค์˜ ์˜์กด์„ฑ ๊ทธ๋ž˜ํ”„๋ฅผ ๋ถ„์„ํ•˜๊ณ  ๊ฒฐํ•ฉ๋„/์‘์ง‘๋„๋ฅผ ์ •๋Ÿ‰์ ์œผ๋กœ ์ธก์ •ํ•˜๋Š” ๋„๊ตฌ์™€ ๋ฐฉ๋ฒ•๋ก . '์˜์กด์„ฑ ๋ถ„์„', '๊ฒฐํ•ฉ๋„ ์ธก์ •', '์ˆœํ™˜ ์˜์กด์„ฑ', '๋ชจ๋“ˆ ๊ฒฐํ•ฉ๋„', '์‘์ง‘๋„ ๋ถ„์„', '์˜์กด์„ฑ ๊ทธ๋ž˜ํ”„', '์ปคํ”Œ๋ง ๋ถ„์„' ๋“ฑ ์ฝ”๋“œ ์˜์กด์„ฑ ๊ด€๋ จ ๋ถ„์„์— ์ด ์Šคํ‚ฌ์„ ์‚ฌ์šฉํ•œ๋‹ค. legacy-analyzer์™€ refactoring-strategist์˜ ์˜์กด์„ฑ ๋ถ„์„ ์—ญ๋Ÿ‰์„ ๊ฐ•ํ™”ํ•œ๋‹ค. ๋‹จ, ์ „์ฒด ํŒŒ์ดํ”„๋ผ์ธ ์˜ค์ผ€์ŠคํŠธ๋ ˆ์ด์…˜์€ ์ด ์Šคํ‚ฌ์˜ ๋ฒ”์œ„๊ฐ€ ์•„๋‹ˆ๋‹ค.

revfactory
revfactory
research
open
lab-tools
529

experiment-tracking-setup

MLflow, Weights & Biases ๋“ฑ ์‹คํ—˜ ์ถ”์  ๋„๊ตฌ ์„ค์ •, ์žฌํ˜„์„ฑ ๋ณด์žฅ, ๋ชจ๋ธ ๋ ˆ์ง€์ŠคํŠธ๋ฆฌ, ์‹คํ—˜ ๋น„๊ต ๋ฐฉ๋ฒ•๋ก  ๊ฐ€์ด๋“œ. '์‹คํ—˜ ์ถ”์ ', 'MLflow', 'W&B', 'Weights and Biases', '์žฌํ˜„์„ฑ', '๋ชจ๋ธ ๋ ˆ์ง€์ŠคํŠธ๋ฆฌ', '์‹คํ—˜ ๋น„๊ต', 'ํ•˜์ดํผํŒŒ๋ผ๋ฏธํ„ฐ ๋กœ๊น…' ๋“ฑ ML ์‹คํ—˜ ๊ด€๋ฆฌ ์‹œ ์ด ์Šคํ‚ฌ์„ ์‚ฌ์šฉํ•œ๋‹ค. training-manager์˜ ์‹คํ—˜ ๊ด€๋ฆฌ ์—ญ๋Ÿ‰์„ ๊ฐ•ํ™”ํ•œ๋‹ค. ๋‹จ, ๋ชจ๋ธ ์•„ํ‚คํ…์ฒ˜ ์„ค๊ณ„๋‚˜ ํ”ผ์ฒ˜ ์—”์ง€๋‹ˆ์–ด๋ง์€ ์ด ์Šคํ‚ฌ์˜ ๋ฒ”์œ„๊ฐ€ ์•„๋‹ˆ๋‹ค.

revfactory
revfactory
research
open
lab-tools
529

research-methodology

A specialized skill providing a detailed framework for academic research methodology design. Used by the methodology-expert agent when designing quantitative, qualitative, or mixed-methods research and selecting samples, instruments, and analysis methods. Automatically applied in contexts such as 'research methodology', 'research design', 'sample design', 'measurement instruments', 'validity and reliability', 'statistical analysis methods'. However, running statistical software (SPSS, R) directly and filing IRB applications are outside the scope of this skill.

revfactory
revfactory
research
open
academic
527

patent-architect

Automatically searches prior art via SerpAPI and generates Chinese patent application forms. This skill should be used when the user wants to generate Chinese patent application forms (ไธ“ๅˆฉ็”ณ่ฏท่กจ), or mentions "patents", "inventions", "ไธ“ๅˆฉ", "็”ณ่ฏท่กจ", or wants to protect technical innovations.

FradSer
FradSer
research
open
lab-tools
518

hol-light

Prove theorems in HOL Light via MCP tools. Use when the user asks to prove a theorem, verify a proof, or work with HOL Light tactics, goals, or lemmas.

jrh13
jrh13
research
open
academic
511

google

Search the web for information. Use when you need to look something up, find current information, or research a topic.

ceedaragents
ceedaragents
research
open
bioinformatics
499

seedance-pipeline

Integrate Seedance 2.0 with ComfyUI nodes and post-processing chains covering upscale, frame interpolation, color grade, composite, and metadata cleanup. Use when building automated video pipelines, connecting Seedance to external tools, or finishing and delivering a generated video clip.

Emily2040
Emily2040
research
open
lab-tools
498

protocol-verification

Simulate and analyze Opentrons protocols to verify correctness. Use when asked to verify, simulate, analyze, validate, or check a protocol, or when needing to confirm a newly created protocol works.

Opentrons
Opentrons
research
open
academic
497

research-proposal

Generate academic research proposals for PhD applications. Use when user asks to "write a research proposal", "create PhD proposal", "generate research plan", "ๆ’ฐๅ†™็ ”็ฉถ่ฎกๅˆ’", "ๅ†™ๅšๅฃซ็”ณ่ฏท", "doctoral proposal", or mentions specific research topics for PhD application. Supports STEM, humanities, and social sciences with field-specific adaptations. Follows Nature Reviews-style academic writing conventions. Supports both English and Chinese output based on user preference.

luwill
luwill
research
open
academic
497

medical-imaging-review

Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature review", "็ปผ่ฟฐ", "systematic review", or mentions of writing academic reviews on deep learning for medical imaging.

luwill
luwill
research
open
academic
496

daily-papers

ๆฏๆ—ฅ่ฎบๆ–‡ๆŽจ่็š„ไธ€ๅฅ่ฏๆ€ปๅ…ฅๅฃใ€‚็”จๆˆท่ฏดโ€œไปŠๆ—ฅ่ฎบๆ–‡ๆŽจ่โ€โ€œ่ฟ‡ๅŽป3ๅคฉ่ฎบๆ–‡ๆŽจ่โ€โ€œ่ฟ‡ๅŽปไธ€ๅ‘จ่ฎบๆ–‡ๆŽจ่โ€ โ€œๆœ€่ฟ‘3ๅคฉ่ฎบๆ–‡โ€โ€œ็œ‹็œ‹่ฟ™ๅ‘จๆœ‰ๅ•ฅ่ฎบๆ–‡โ€ๆ—ถไฝฟ็”จใ€‚ ๅ†…้ƒจไผš่‡ชๅŠจไธฒ่”่ฎบๆ–‡ๆŠ“ๅ–ใ€ๆŽจ่็”Ÿๆˆใ€้‡็‚น่ฎบๆ–‡็ฌ”่ฎฐไธ‰ๆญฅ๏ผŒๆ— ้œ€็”จๆˆทๆ‰‹ๅŠจๆ‹†ๅผ€ใ€‚

huangkiki
huangkiki
research
open
academic
493

research-grants

Write competitive research proposals for NSF, NIH, DOE, and DARPA. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.

jimmc414
jimmc414
research
open
computational-chemistry
493

clinical-reports

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.

jimmc414
jimmc414
research
open
scientific-computing
493

research-lookup

Look up current research information using Perplexity's Sonar Pro or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.

jimmc414
jimmc414
research
open
academic
493

venue-templates

Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.

jimmc414
jimmc414
research
open
academic
493

peer-review

Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

jimmc414
jimmc414
research
open
academic
493

citation-management

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.

jimmc414
jimmc414
research
open
academic
493

scientific-writing

Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

jimmc414
jimmc414
research
open
scientific-computing
493

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

jimmc414
jimmc414
research
open
scientific-computing
493

hypothesis-generation

Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.

jimmc414
jimmc414
research
open
academic
493

hypothesis-generation

Generate testable hypotheses from observations. Use for formulating research questions, designing experiments, exploring competing explanations, developing predictions, and proposing mechanisms. Triggers: generate hypothesis, formulate hypothesis, research question, experimental design, competing explanations, mechanistic hypothesis, testable predictions, scientific inquiry.

jimmc414
jimmc414
research
open
bioinformatics
492

rev-struct

Reconstruct data structures by analyzing memory access patterns across functions

P4nda0s
P4nda0s
research
open
computational-chemistry
492

patch-applier

Draft and apply small, atomic patches; always present a preview diff and appropriate verification commands.

pilinux
pilinux
research
open
astronomy-physics
489

helm-chart

Use for Helm chart work - creating charts, modifying existing charts, values design, testing. For the Astronomer APC repository, see SPEC.md for repository-specific guidance.

astronomer
astronomer
research
open
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