home/categories/scientific-computing/jaechang-hits-sciagent-skills-skills-proteomics-protein-engineering-pyopenms-mass-spectrometry-skill-md
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pyopenms-mass-spectrometry

Mass spectrometry data processing with PyOpenMS. Use for LC-MS/MS proteomics and metabolomics workflows — mzML/mzXML file I/O, signal processing (smoothing, peak picking, centroiding), feature detection and linking across samples, peptide/protein identification with FDR control, untargeted metabolomics pipelines. For simple spectral matching and metabolite ID, use matchms instead.

jaechang-hits
maintainer
jaechang-hits
업데이트됨 2/18/2026
스타
93
포크
12
quick start

Installation and usage

Mass spectrometry data processing with PyOpenMS. Use for LC-MS/MS proteomics and metabolomics workflows — mzML/mzXML file I/O, signal processing (smoothing, peak picking, centroiding), feature detection and linking across samples, peptide/protein identification with FDR control, untargeted metabolomics pipelines. For simple spectral matching and metabolite ID, use matchms instead.

설치
$ install --globalskills.sh
사용법

설치 후 터미널에서 다음 명령을 실행하여 이 스킬을 사용할 수 있습니다:

skills use pyopenms-mass-spectrometry