home/categories/lab-tools/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-ngs-qc-read-qc-contamination-screening-skill-md
lab-toolsresearch

bio-read-qc-contamination-screening

Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.

mdbabumiamssm
maintainer
mdbabumiamssm
업데이트됨 2/4/2026
스타
24
포크
4
quick start

Installation and usage

Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.

설치
$ install --globalskills.sh
사용법

설치 후 터미널에서 다음 명령을 실행하여 이 스킬을 사용할 수 있습니다:

skills use bio-read-qc-contamination-screening