skills.homes logoskills.homescapability registry
home/categories/scientific-computing/bisnake2001-chromskills-31-toolbased-nested-tad-detection-skill-md
cd ..
scientific-computingresearch

nested-tad-detection

This skill detects hierarchical (nested) TAD structures from Hi-C contact maps (in .cool or mcool format) using OnTAD, starting from multi-resolution .mcool files. It extracts a user-specified chromosome and resolution, converts the data to a dense matrix, runs OnTAD, and organizes TAD calls and logs for downstream 3D genome analysis.

Ver código-fontescientific-computing
BIsnake2001
maintainer
BIsnake2001
Atualizado 12/12/2025
Estrelas
3
Forks
2
quick start

Installation and usage

This skill detects hierarchical (nested) TAD structures from Hi-C contact maps (in .cool or mcool format) using OnTAD, starting from multi-resolution .mcool files. It extracts a user-specified chromosome and resolution, converts the data to a dense matrix, runs OnTAD, and organizes TAD calls and logs for downstream 3D genome analysis.

Instalação
$ install --globalskills.sh
Uso

Depois de instalar, você pode usar esta skill executando o seguinte comando no terminal:

skills use nested-tad-detection