home/categories/scientific-computing/pharmolix-openbiomed-skills-single-cell-foundation-model-scrna-seq-geneformer-skill-md
scientific-computingresearch
single-cell-foundation-model-geneformer
Use this skill when a task involves Geneformer workflows, especially TranscriptomeTokenizer input preparation, tokenized `.dataset` generation, cell or gene classification with `Classifier`, embedding extraction with `EmbExtractor`, and in silico perturbation analysis with `InSilicoPerturber`.
maintainer
PharMolix
Atualizado 3/16/2026
Estrelas
1036
Forks
120
quick start
Installation and usage
Use this skill when a task involves Geneformer workflows, especially TranscriptomeTokenizer input preparation, tokenized `.dataset` generation, cell or gene classification with `Classifier`, embedding extraction with `EmbExtractor`, and in silico perturbation analysis with `InSilicoPerturber`.
Instalação
$ install --globalskills.sh
Uso
Depois de instalar, você pode usar esta skill executando o seguinte comando no terminal:
skills use single-cell-foundation-model-geneformer