home/categories/research
domain cluster

Research

Scientific computing and academic tools.

8969 skillsall categories
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
computational-chemistry
17.6K

clinical-reports

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.

davila7
davila7
research
open
scientific-computing
17.6K

deepchem

Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.

davila7
davila7
research
open
computational-chemistry
17.6K

clinicaltrials-database

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.

davila7
davila7
research
open
lab-tools
17.6K

opentrons-integration

Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.

davila7
davila7
research
open
scientific-computing
17.6K

matchms

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

davila7
davila7
research
open
scientific-computing
17.6K

qutip

Quantum mechanics simulations and analysis using QuTiP (Quantum Toolbox in Python). Use when working with quantum systems including: (1) quantum states (kets, bras, density matrices), (2) quantum operators and gates, (3) time evolution and dynamics (Schrödinger, master equations, Monte Carlo), (4) open quantum systems with dissipation, (5) quantum measurements and entanglement, (6) visualization (Bloch sphere, Wigner functions), (7) steady states and correlation functions, or (8) advanced methods (Floquet theory, HEOM, stochastic solvers). Handles both closed and open quantum systems across various domains including quantum optics, quantum computing, and condensed matter physics.

davila7
davila7
research
open
scientific-computing
17.6K

fluidsim

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.

davila7
davila7
research
open
academic
16.5K

researcher-hand-skill

Expert knowledge for AI deep research — methodology, source evaluation, search optimization, cross-referencing, synthesis, and citation formats

RightNow-AI
RightNow-AI
research
open
lab-tools
16.1K

notebook

Manage DeepTutor notebooks — list, create, view, import and remove records.

HKUDS
HKUDS
research
open
academic
14.9K

advanced-evaluation

This skill should be used when the user asks to "implement LLM-as-judge", "compare model outputs", "create evaluation rubrics", "mitigate evaluation bias", or mentions direct scoring, pairwise comparison, position bias, evaluation pipelines, or automated quality assessment.

muratcankoylan
muratcankoylan
research
open
academic
14.1K

baoyu-article-illustrator

Analyzes article structure, identifies positions requiring visual aids, generates illustrations with Type × Style × Palette three-dimension approach. Use when user asks to "illustrate article", "add images", "generate images for article", or "为文章配图".

JimLiu
JimLiu
research
open
academic
13.3K

humanizer

Remove signs of AI-generated writing from text. Use when editing or reviewing text to make it sound more natural and human-written. Based on Wikipedia's comprehensive "Signs of AI writing" guide. Detects and fixes patterns including: inflated symbolism, promotional language, superficial -ing analyses, vague attributions, em dash overuse, rule of three, AI vocabulary words, passive voice, negative parallelisms, and filler phrases.

blader
blader
research
open
academic
12.5K

agentdb-vector-search

Implement semantic vector search with AgentDB for intelligent document retrieval, similarity matching, and context-aware querying. Use when building RAG systems, semantic search engines, or intelligent knowledge bases.

ruvnet
ruvnet
research
open
computational-chemistry
12.1K

simplify

Reduce formula complexity using Z3 tactic chains. Supports configurable tactic pipelines for boolean, arithmetic, and bitvector simplification.

Z3Prover
Z3Prover
research
open
scientific-computing
12.1K

explain

Parse and interpret Z3 output for human consumption. Handles models, unsat cores, proofs, statistics, and error messages. Translates solver internals into plain-language explanations.

Z3Prover
Z3Prover
research
open
lab-tools
11.6K

decision-capture

Detect decisions in conversation and record them with rationale, alternatives, and outcome tracking.

nearai
nearai
research
open
academic
11.3K

aphorisms

CRUD on {PRINCIPAL.NAME}'s curated aphorism collection — search by theme, add with metadata, research thinkers, match quotes to newsletter content. USE WHEN aphorism, quote, saying, find quote for newsletter, research thinker quotes, add aphorism, search aphorisms, find aphorism.

danielmiessler
danielmiessler
research
open
bioinformatics
11.3K

iterativedepth

2-8 scientific lens passes to surface hidden requirements single-pass analysis misses. USE WHEN iterative depth, deep exploration, multi-angle analysis, multiple perspectives, examine from angles, surface hidden requirements.

danielmiessler
danielmiessler
research
open
computational-chemistry
11.3K

promptinjection

Test LLM applications for prompt injection vulnerabilities — jailbreak attempts, system prompt extraction, context manipulation, guardrail bypass techniques, direct injection, indirect injection, multi-stage attacks, and reconnaissance. USE WHEN prompt injection, jailbreak, LLM security, AI security assessment, pentest AI application, test chatbot, guardrail bypass, direct injection, indirect injection, RAG poisoning, multi-stage attack, complete assessment, reconnaissance.

danielmiessler
danielmiessler
research
open
scientific-computing
11.3K

science

Hypothesis-test-analyze cycles for systematic problem-solving — the meta-skill governing all others. Includes define goal, generate hypotheses, design experiment, measure results, analyze results, iterate, full cycle, quick diagnosis, and structured investigation. USE WHEN think about, figure out, try approaches, experiment with, iterate on, improve, optimize, define goal, generate hypotheses, design experiment, measure results, analyze results, full cycle, quick diagnosis, structured investigation, science, hypothesis.

danielmiessler
danielmiessler
research
open
scientific-computing
11.1K

statistical-analysis

Apply statistical methods including descriptive stats, trend analysis, outlier detection, and hypothesis testing. Use when analyzing distributions, testing for significance, detecting anomalies, computing correlations, or interpreting statistical results.

anthropics
anthropics
research
open
academic
11.1K

competitive-intelligence

Research your competitors and build an interactive battlecard. Outputs an HTML artifact with clickable competitor cards and a comparison matrix. Trigger with "competitive intel", "research competitors", "how do we compare to [competitor]", "battlecard for [competitor]", or "what's new with [competitor]".

anthropics
anthropics
research
open
Previous
Page 11 / 374
Next