Expert guidance for turning existing Snakemake analysis projects (with Snakefile + src/) into pip-installable CLI tools that can deploy the workflow to new projects. Use when the user has a working analysis project with Snakemake and R/Python scripts and wants to make it reusable/deployable. Creates CLI with init, validate, update, clean, info commands. Reference implementation at /Users/wolski/projects/ptm-pipeline.
Review a batch of images and output layout suggestions to an isolated batch file. Designed for parallel execution - each batch writes to its own file.
Node.js platform functions for the East language. Use when writing East programs that need Console I/O, FileSystem operations, HTTP Fetch requests, Cryptography, Time operations, Path manipulation, Random number generation, or Testing. Triggers for: (1) Writing East programs with @elaraai/east-node-std, (2) Using platform functions like Console.log, FileSystem.readFile, Fetch.get, Crypto.uuid, Time.now, Path.join, Random.normal, (3) Testing East code with describeEast and Assert.
Standards for creating robust local development startup scripts
Expert backend for run-os / run-os-sandboxed execution via x07-os-runner. Prefer `x07 run --os` as the canonical agent entry point.
Policy และ automation สำหรับ data retention, archival และ deletion ตาม compliance requirements
This skill should be used when the user requests Mac automation via AppleScript, including: Mail operations, Reminders/Calendar management, Safari control, Finder operations, system controls (volume, brightness, notifications, app launching), third-party apps (development tools, task management, media players), or mentions "AppleScript" or "automate Mac".
I/O platform functions for the East language on Node.js. Use when writing East programs that need SQL databases (SQLite, PostgreSQL, MySQL), NoSQL databases (Redis, MongoDB), S3 storage, file transfers (FTP, SFTP), file format parsing (XLSX, XML), or compression (Gzip, Zip, Tar). Triggers for: (1) Writing East programs with @elaraai/east-node-io, (2) Database operations with SQL.SQLite, SQL.Postgres, SQL.MySQL, NoSQL.Redis, NoSQL.MongoDB, (3) Cloud storage with Storage.S3, (4) File transfers with Transfer.FTP, Transfer.SFTP, (5) Format parsing with Format.XLSX, Format.XML, (6) Compression with Compression.Gzip, Compression.Zip, Compression.Tar.
Use PROACTIVELY this skill when you need to create or update custom commands following best practices
macOS-specific bash scripting patterns, compatibility considerations, and best practices. Use when writing or modifying shell scripts, especially for toolchain-2026 installation and configuration scripts. Includes bash version handling, POSIX compatibility, and macOS system gotchas.
Find and read multiple files in one operation (50-70% faster for exploration)
Use when implementing error handling, cleanup routines, or debugging in shell scripts. Covers traps, exit codes, and robust error patterns.
This skill should be used when the user mentions "bun", "bunx", "npm install", "npm run", "node script.js", "npx", "yarn add", "pnpm", "package manager", "run tests", "bundle for distribution", or any Node.js/npm commands. Also use for JavaScript or TypeScript package management, testing, or script execution. Provides Bun-first runtime standards - all npm/node commands should use Bun equivalents.
Execute C# code dynamically in Unity Editor via uloop CLI. Use for editor automation: (1) Prefab/material wiring and AddComponent operations, (2) Reference wiring with SerializedObject, (3) Scene/hierarchy edits and batch operations. NOT for file I/O or script authoring.
Master the uv package manager for fast Python dependency management, virtual environments, and modern Python backend project workflows. Use when setting up Python projects, managing dependencies, or optimizing Python development workflows with uv.
Python environment variable management using .env files and python-dotenv for simple projects
Run and manage long-running background tasks in the shell. Use for starting processes in background, monitoring output, listing active tasks, and killing processes. Essential for dev servers, watch modes, builds, and any non-blocking operations.
Session-based file cleanup for privacy compliance. Use to delete temporary files, uploaded clinical notes, generated outputs, and expired logs to maintain HIPAA-friendly operations.
Probitas project setup and installation. Use when initializing Probitas, setting up E2E testing, or installing probitas CLI.
Polibaseのデータ処理ワークフローとパイプラインを説明します。議事録処理、Web scraping、政治家データ収集、政治家マッチングなどの処理フロー、依存関係、実行順序を理解する際にアクティベートされます。
PowerShell best practices for Windows development, including cmdlet patterns, module development, and error handling
