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Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords, organism, author, or specific fields.
Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input. Invoke when the user asks for gene details, publication statistics, or needs to analyze a list of genes.
Use when identifying collaboration opportunities across fields, finding experts in complementary disciplines, translating methodologies between scientific domains, or building interdisciplinary research teams. Identifies synergies between scientific disciplines, matches researchers with complementary expertise, and facilitates cross-domain collaborations. Supports interdisciplinary grant applications and innovative research team formation.
Access Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release info.
Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope features, or perform peptide identification in proteomics/metabolomics workflows.
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Generate Circos configuration files for circular genomics data visualization. Supports genomic variations (SNPs, CNVs, structural variants), cell-cell communication networks, and custom track configurations for publication-ready circular plots.
Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition.
Advanced sample size and power calculations for complex study designs including survival analysis, clustered designs, and multiple comparisons.
Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Guide for generating and maintaining contract documentation from JSON schemas. Use when creating schemas, generating docs, or documenting contract APIs.
Use when designing, building, or refining frontend UI/UX: layouts, components, visual systems, typography, color, and UX patterns for websites, landing pages, dashboards, and product interfaces. Provides searchable styles, palettes, font pairings, charts, and stack best practices (React, Next.js, Vue, Svelte, SwiftUI, React Native, Flutter, Tailwind).
Guide for deploying CosmWasm contracts using cw-orchestrator and Abstract SDK. Use when publishing contracts, deploying to networks, or managing local chains.
Socratic questioning and ideation methodology for project conception using structured brainstorming frameworks
Transform project brief into detailed, testable specifications using spec-driven development methodology
Triggers: KISS, YAGNI, SOLID, clean code, code quality, refactor, design principles Provides guidance on fundamental software design principles to reduce complexity, prevent over-engineering, and improve maintainability.
