home/categories/bioinformatics/freedomintelligence-openclaw-medical-skills-skills-bio-gatk-variant-calling-skill-md
bioinformaticsresearch
bio-gatk-variant-calling
Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.
maintainer
FreedomIntelligence
Обновлено 3/8/2026
Звёзды
1987
Форки
270
quick start
Installation and usage
Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.
Установка
$ install --globalskills.sh
Использование
После установки вы можете использовать этот skill, выполнив следующую команду в терминале:
skills use bio-gatk-variant-calling