home/categories/scientific-computing/jaechang-hits-sciagent-skills-skills-structural-biology-drug-discovery-datamol-cheminformatics-skill-md
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datamol-cheminformatics

Pythonic wrapper around RDKit with simplified interface and sensible defaults for drug discovery cheminformatics. Use for SMILES parsing, molecular standardization, descriptor computation, fingerprints, similarity search, clustering, diversity selection, scaffold analysis, BRICS/RECAP fragmentation, 3D conformer generation, and molecular visualization. Returns native rdkit.Chem.Mol objects. Prefer datamol over raw RDKit for standard workflows; use RDKit directly for advanced control or custom parameters.

jaechang-hits
maintainer
jaechang-hits
Обновлено 2/18/2026
Звёзды
93
Форки
12
quick start

Installation and usage

Pythonic wrapper around RDKit with simplified interface and sensible defaults for drug discovery cheminformatics. Use for SMILES parsing, molecular standardization, descriptor computation, fingerprints, similarity search, clustering, diversity selection, scaffold analysis, BRICS/RECAP fragmentation, 3D conformer generation, and molecular visualization. Returns native rdkit.Chem.Mol objects. Prefer datamol over raw RDKit for standard workflows; use RDKit directly for advanced control or custom parameters.

Установка
$ install --globalskills.sh
Использование

После установки вы можете использовать этот skill, выполнив следующую команду в терминале:

skills use datamol-cheminformatics