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Bioinformatics

Genomics and biological data.

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bioinformatics
2

semi-conjugacy

Surjective map intertwining two dynamical systems

plurigrid
plurigrid
research
open
bioinformatics
2

ultrametric-distance

Non-Archimedean distance metrics for hierarchical clustering and p-adic analysis

plurigrid
plurigrid
research
open
bioinformatics
2

rama-gay-clojure

Red Planet Labs Rama with Gay.jl deterministic coloring for 100x backend

plurigrid
plurigrid
research
open
bioinformatics
2

cybernetic-immune

Cybernetic immune system with Varela+Friston+Powers for Self/Non-Self discrimination via reafference, GF(3) trit encoding, and information geometry

plurigrid
plurigrid
research
open
bioinformatics
2

moebius-inversion

Möbius inversion on posets and lattices: alternating sums, chromatic polynomials, incidence algebras, and centrality predicates.

plurigrid
plurigrid
research
open
bioinformatics
2

levity-levin

Playful mutual ingression meets Leonid Levin's algorithmic bounds. Use for: playful exploration with theoretical guarantees, mutual ingression with convergence proofs, emergent solutions within complexity bounds, social computation meeting algorithmic optimality.

plurigrid
plurigrid
research
open
bioinformatics
2

structured-decomp

StructuredDecompositions.jl: Sheaves on tree decompositions for FPT algorithms

plurigrid
plurigrid
research
open
bioinformatics
2

fasttime-mcp

Maximum velocity MCP execution via geodesic untangling. Maoist self-criticism for why slowtime was ever necessary. Topological cybernetic feedback for ongoing tour discovery.

plurigrid
plurigrid
research
open
bioinformatics
2

unworld

Replace time with color chain derivations via seed chaining

plurigrid
plurigrid
research
open
bioinformatics
2

structured-decomp

StructuredDecompositions.jl sheaves on tree decompositions for FPT algorithms with bidirectional navigation

plurigrid
plurigrid
research
open
bioinformatics
2

braindance-worlds

GF(3)-conserved distribution of Claude threads across Aptos worlds

plurigrid
plurigrid
research
open
bioinformatics
2

limit-set

Asymptotic behavior of trajectories (ω/α-limit sets)

plurigrid
plurigrid
research
open
bioinformatics
2

gh-interactome

GitHub author interaction network discovery. Maps cobordisms between

plurigrid
plurigrid
research
open
bioinformatics
2

persistent-homology

Topological data analysis for stable feature verification across filtrations

plurigrid
plurigrid
research
open
bioinformatics
2

true-alife

TrueALIFE: Self-Indexing Automata at the Edge of Chaos

plurigrid
plurigrid
research
open
bioinformatics
2

topos-of-music

Guerino Mazzola's mathematical music theory - Forms, Denotators, Morphisms, and Neo-Riemannian PLR operations with Gay.jl color integration

plurigrid
plurigrid
research
open
bioinformatics
2

td-pacf

Partial auto-correlation analysis for direct lag relationships

teradata-labs
teradata-labs
research
open
bioinformatics
2

discopy

DisCoPy: Python library for computing with string diagrams - monoidal

plurigrid
plurigrid
research
open
bioinformatics
2

condensed-analytic-stacks

Scholze-Clausen condensed mathematics bridge to sheaf neural networks via 6-functor formalism

plurigrid
plurigrid
research
open
bioinformatics
2

td-change-point

Change point detection in time series for structural breaks

teradata-labs
teradata-labs
research
open
bioinformatics
2

unworld

Replace temporal succession with derivational chains using deterministic seeds and GF(3) invariants.

plurigrid
plurigrid
research
open
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