اپنے ایجنٹ کے لیے موزوں صلاحیت تلاش کریں۔
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics. Computes treeness, RCV, treeness/RCV, parsimony informative sites, evolutionary rate, DVMC, tree length, alignment gap statistics, GC content, and bootstrap support using PhyKIT, Biopython, and DendroPy. Performs NJ/UPGMA/parsimony tree construction, Robinson-Foulds distance, Mann-Whitney U tests, and batch analysis across gene families. Integrates with ToolUniverse for sequence retrieval (NCBI, UniProt, Ensembl) and tree annotation. Use when processing FASTA/PHYLIP/Nexus/Newick files, computing phylogenetic metrics, comparing taxa groups, or answering questions about alignments, trees, parsimony, or molecular evolution.
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2). Use when tasks involve quantum chemistry calculations, molecular property prediction, DFT or semiempirical methods, neural network potentials (AIMNet2), protein-ligand binding predictions, or automated computational chemistry pipelines. Provides cloud compute resources with no local setup required.
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Manages Python package dependencies. Use when adding, upgrading, removing, or syncing Python/pypi packages in projects or libs.
Transit Least Squares (TLS) algorithm for detecting exoplanet transits in light curves. Use when searching for transiting exoplanets specifically, as TLS is more sensitive than Lomb-Scargle for transit-shaped signals. Based on the transitleastsquares Python package.
Creating fuzz driver for Python libraries using LibFuzzer. This skill is useful when agent needs to work with creating fuzz drivers / fuzz targets for Python project and libraries.
Guide for translating Python collection operations to idiomatic Scala. Use when converting Python code that uses lists, dictionaries, sets, or involves collection transformations like map, filter, reduce, sorting, and aggregations.
Guide for writing idiomatic Scala when translating from Python. Use when the goal is not just syntactic translation but producing clean, idiomatic Scala code. Covers immutability, expression-based style, sealed hierarchies, and common Scala conventions.
Reference guide for translating Python syntax constructs to Scala equivalents. Use when converting Python code to Scala and need mappings for basic syntax elements like variable declarations, control flow, comprehensions, string formatting, and common operators.
World-class data engineering skill for building scalable data pipelines, ETL/ELT systems, real-time streaming, and data infrastructure. Expertise in Python, SQL, Spark, Airflow, dbt, Kafka, Flink, Kinesis, and modern data stack. Includes data modeling, pipeline orchestration, data quality, streaming quality monitoring, and DataOps. Use when designing data architectures, building batch or streaming data pipelines, optimizing data workflows, or implementing data governance.
World-class data science skill for statistical modeling, experimentation, causal inference, and advanced analytics. Expertise in Python (NumPy, Pandas, Scikit-learn), R, SQL, statistical methods, A/B testing, time series, and business intelligence. Includes experiment design, feature engineering, model evaluation, and stakeholder communication. Use when designing experiments, building predictive models, performing causal analysis, or driving data-driven decisions.
Guide for translating Python classes, inheritance, and object-oriented patterns to Scala. Use when converting Python code with classes, dataclasses, abstract classes, inheritance, properties, static methods, class methods, or design patterns.
Transform sequential Python code into parallel/concurrent implementations. Use when asked to parallelize Python code, improve code performance through concurrency, convert loops to parallel execution, or identify parallelization opportunities. Handles CPU-bound (multiprocessing), I/O-bound (asyncio, threading), and data-parallel (vectorization) scenarios.
Align Python version and repo-declared dependencies (requirements.txt / environment.yml) before installing packages for NLP research code reproduction.
