home/categories/scientific-computing/gptomics-bioskills-read-qc-contamination-screening-skill-md
scientific-computingresearch

bio-read-qc-contamination-screening

Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.

GPTomics
maintainer
GPTomics
اپ ڈیٹ ہوا 2/13/2026
اسٹارز
471
فورکس
81
quick start

Installation and usage

Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.

انسٹالیشن
$ install --globalskills.sh
استعمال

انسٹال کرنے کے بعد، آپ یہ اسکل ٹرمینل میں درج ذیل کمانڈ چلا کر استعمال کر سکتے ہیں:

skills use bio-read-qc-contamination-screening