home/categories/lab-tools/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-genomics-metagenomics-bioskills-strain-tracking-skill-md
lab-toolsresearch
bio-metagenomics-strain-tracking
Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.
maintainer
mdbabumiamssm
اپ ڈیٹ ہوا 2/4/2026
اسٹارز
24
فورکس
4
quick start
Installation and usage
Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.
انسٹالیشن
$ install --globalskills.sh
استعمال
انسٹال کرنے کے بعد، آپ یہ اسکل ٹرمینل میں درج ذیل کمانڈ چلا کر استعمال کر سکتے ہیں:
skills use bio-metagenomics-strain-tracking