sample-archaeology
Trace sample chains across records — identify original sources, who sampled whom, and production lineage
Trace sample chains across records — identify original sources, who sampled whom, and production lineage
Personal device and appliance manager with error code lookup and troubleshooting. Tracks all your devices (appliances, electronics, software) with model numbers, manuals, and warranty info. When something breaks, tell it the error code and get instant solutions. Use when: device shows error, need manual, warranty check, adding new device, maintenance reminder. Triggers: /device, /geräte, 'mein Geschirrspüler', 'Fehler E24', 'Fehlermeldung', device problems, appliance issues.
Conduct Gage R&R studies and validate measurement systems per AIAG MSA manual. Covers variable and attribute studies, acceptance criteria, and calculation methods. USE WHEN user says 'MSA', 'gage R&R', 'GR&R', 'measurement system', 'repeatability', 'reproducibility', 'attribute agreement', or 'ndc'. Integrates with ControlPlan, SPC, and AutomotiveManufacturing skills.
Access lab results with Quest Diagnostics - view test results, schedule appointments, and manage MyQuest portal
Monitor and control Snapmaker 3D printers (U1 with Moonraker/Klipper). Use when checking print status, temperatures, progress, or controlling prints (pause/resume/cancel). Triggers on "printer", "3D print", "Snapmaker", "print status", "nozzle temp", "bed temp".
Operate and troubleshoot BambuLab printers with the bambu-cli (status/watch, print start/pause/resume/stop, files, camera, gcode, AMS, calibration, motion, fans, light, config, doctor). Use when a user asks to control or monitor a BambuLab printer, set up profiles or access codes, or translate a task into safe bambu-cli commands with correct flags, output format, and confirmations.
Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardware control.
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+ scientific tools including machine learning models, datasets, APIs, and analysis packages. Use when searching for scientific tools, executing computational biology workflows, composing multi-step research pipelines, accessing databases like OpenTargets/PubChem/UniProt/PDB/ChEMBL, performing tool discovery for research tasks, or integrating scientific computational resources into LLM workflows.
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.
Create OpenCode custom commands for repeatable tasks.