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scientific-computingresearch

taxonomy-resolver

Resolves ambiguous organism names to precise NCBI taxonomy IDs and scientific names, then recommends appropriate IWC (Intergalactic Workflow Commission) Galaxy workflows for analysis. Use this skill when users provide common names (like "malaria parasite", "E. coli", "mouse"), abbreviated names, or when you need to convert any organism reference to an exact scientific name for API queries. This skill handles disambiguation through conversation, validates taxonomy IDs via NCBI Taxonomy API, provides ENA FASTQ search capabilities, and ALWAYS recommends existing IWC workflows rather than producing custom scripts or analysis steps.

dannon
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dannon
更新于 11/14/2025
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quick start

Installation and usage

Resolves ambiguous organism names to precise NCBI taxonomy IDs and scientific names, then recommends appropriate IWC (Intergalactic Workflow Commission) Galaxy workflows for analysis. Use this skill when users provide common names (like "malaria parasite", "E. coli", "mouse"), abbreviated names, or when you need to convert any organism reference to an exact scientific name for API queries. This skill handles disambiguation through conversation, validates taxonomy IDs via NCBI Taxonomy API, provides ENA FASTQ search capabilities, and ALWAYS recommends existing IWC workflows rather than producing custom scripts or analysis steps.

安装
$ install --globalskills.sh
使用

安装后,您可以通过在终端运行以下命令来使用此技能:

skills use taxonomy-resolver