home/categories/computational-chemistry/gptomics-bioskills-chemoinformatics-similarity-searching-skill-md
computational-chemistryresearch

bio-similarity-searching

Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. Finds structurally similar compounds using ECFP or MACCS keys and clusters molecules by structural similarity using Butina clustering. Use when finding analogs of a query compound or clustering chemical libraries.

GPTomics
maintainer
GPTomics
更新于 2/13/2026
星标
471
分支
81
quick start

Installation and usage

Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. Finds structurally similar compounds using ECFP or MACCS keys and clusters molecules by structural similarity using Butina clustering. Use when finding analogs of a query compound or clustering chemical libraries.

安装
$ install --globalskills.sh
使用

安装后,您可以通过在终端运行以下命令来使用此技能:

skills use bio-similarity-searching