home/categories/bioinformatics/gptomics-bioskills-spatial-transcriptomics-spatial-deconvolution-skill-md
bioinformaticsresearch
bio-spatial-transcriptomics-spatial-deconvolution
Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.
maintainer
GPTomics
更新于 2/13/2026
星标
471
分支
81
quick start
Installation and usage
Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.
安装
$ install --globalskills.sh
使用
安装后，您可以通过在终端运行以下命令来使用此技能：
skills use bio-spatial-transcriptomics-spatial-deconvolution