home/categories/scientific-computing/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-external-collections-life-sciences-claudeai-main-single-cell-rna-qc-skill-md
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single-cell-rna-qc
Perform quality control on single-cell RNA-seq data (.h5ad, 10x .h5, or 10x directories) using scverse best practices, MAD-based filtering (log1p counts/genes, high-tail MT%), and generate filtered AnnData plus QC plots and summary JSON. Use when users request scRNA-seq QC, filtering low-quality cells, data quality assessment, or QC visualizations.
maintainer
mdbabumiamssm
更新于 2/7/2026
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quick start
Installation and usage
Perform quality control on single-cell RNA-seq data (.h5ad, 10x .h5, or 10x directories) using scverse best practices, MAD-based filtering (log1p counts/genes, high-tail MT%), and generate filtered AnnData plus QC plots and summary JSON. Use when users request scRNA-seq QC, filtering low-quality cells, data quality assessment, or QC visualizations.
安装
$ install --globalskills.sh
使用
安装后，您可以通过在终端运行以下命令来使用此技能：
skills use single-cell-rna-qc