home/categories/bioinformatics/pharmolix-openbiomed-skills-spatial-transcriptomics-spatial-data-io-skill-md
bioinformaticsresearch

spatial-transcriptomics-spatial-data-io

Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.

PharMolix
maintainer
PharMolix
更新于 3/16/2026
星标
1036
分支
120
quick start

Installation and usage

Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.

安装
$ install --globalskills.sh
使用

安装后,您可以通过在终端运行以下命令来使用此技能:

skills use spatial-transcriptomics-spatial-data-io