spatial-transcriptomics-spatial-data-io
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.
Installation and usage
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.
安裝後,您可以通過在終端運行以下命令來使用此技能:
skills use spatial-transcriptomics-spatial-data-io