home/categories/data-engineering/pharmolix-openbiomed-skills-spatial-transcriptomics-foundation-model-stofm-skill-md
data-engineeringdata-ai
single-cell-foundation-model-stofm
Use this skill when a task involves the local SToFM project in /DATA/disk0/zhaosy/home/SToFM, especially preprocessing spatial transcriptomics data for SToFM, generating cell embeddings with the cell encoder plus SE(2) Transformer pipeline, handling spatial coordinates, or preparing SToFM embeddings for downstream region segmentation or cell type annotation.
maintainer
PharMolix
更新於 3/16/2026
星標
1036
分支
120
quick start
Installation and usage
Use this skill when a task involves the local SToFM project in /DATA/disk0/zhaosy/home/SToFM, especially preprocessing spatial transcriptomics data for SToFM, generating cell embeddings with the cell encoder plus SE(2) Transformer pipeline, handling spatial coordinates, or preparing SToFM embeddings for downstream region segmentation or cell type annotation.
安裝
$ install --globalskills.sh
使用
安裝後，您可以透過在終端機執行以下指令來使用此技能：
skills use single-cell-foundation-model-stofm